I've had this problem before with our devkit and I resolved it using the UpdateCert apk for Mini. I've just had the same issue happen with my Clover VM in Genymotion, but I get the following error:
C:\tmp>adb install CloverUpdateCert_Mini.apk
1538 KB/s (1480094 bytes in 0.939s)
pkg: /data/local/tmp/CloverUpdateCert_Mini
Failure [INSTALL_FAILED_SHARED_USER_INCOMPATIBLE]
I read that this happens when installing the wrong version, so I tried the one for Mobile afterwards, and had the same error.
What can I do resolve this?